Question: conservative position extraction
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gatiyatov • 0 wrote:
I have kind of fastq files with multiple records:
- >ID some information
- --A-TGTGAC
- 0100111100 etc.
Where the 2nd line is a consensus sequence (gap or nucleotide), and 3rd is (now binary) a conservative. How to parse this file and extract position with the "1" score? Pure Python code is too complicated. Biopython works with only Phred score.