Features in GenBank files
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17 months ago
speycast • 0

Hi,

I'm trying to retrieve GenBank files for genes with older assembly version (GRCh37) using eutils Bash

For example: efetch -db nucleotide -id NC_000012.11 -seq_start 53700940 -seq_stop 53715954 -format gb and I noticed in theFEATURE section in the .gb file it does not have features such as mRNA, CDS region. It only contains source, does anyone know how can I retrieve mRNA, CDS altogether with FEATURES?

Thanks very much!

gene mRNA GenBank • 383 views
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Entering edit mode
17 months ago
Sej Modha 5.0k

You can use -format gbwithparts for that.

efetch -db nucleotide -id NC_000012.11 -seq_start 53700940 -seq_stop 53715954 -format gbwithparts

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Thanks so much Sej!!

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