How could I create a graph reference for a gene with different transcripts sequences?
I have created a fasta file that contained several transcripts sequences of a certain gene, as below example:
>transcript1 ATCGATCGATCG >transcript2 ATCGATCGAACG >transcript3 ATCGATCGAGGG
and ran the
vg construct to build the graph for this fasta(without any variants vcf).
In my mind, I should get a graph like
/GG\ ATCGATCGA-TCG \A/
but I've got three separate graphs. I don't know is that normal or I used the wrong function. I may need someone to give me some advise. Sorry, if this was quite an easy question.