Hello,
My PhD thesis is mostly related about RNA-Seq analysis by using public available datasets form GEO. I am using Galaxy Platform to perform my raw sequence analysis. I do not have computational power and high storage capacity. I am saving all of my count matrix resulted from FeatureCounts , but could not save trimmed reads, BAM files etc. to my computer. Additionally, Galaxy Platform gives only 250GB storage. Therefore, I could not save these files into Galaxy history too. When it's time to submit my results to any journal which have peer-review processes, will these files (trimmed reads, BAM/SAM files) be required for submission or during peer-review processes?
Thanks
You just need to upload the fastq files and a processed counts/rpkm file.