I am using karyoploteR to visualize CNV. I am getting following error. But I do have the genomic region in a bed file. Could anyone provide a suggestion what might have gone wrong?
Error in plotKaryotype(zoom = "Chr01:3647-12170735", main = "BedGraphs", : You are trying to set the zoom to a region not part of the current genome. In addition: Warning message: In .Seqinfo.mergexy(x, y) : The 2 combined objects have no sequence levels in common. (Use suppressWarnings() to suppress this warning.)