CNVRs visualization with karyoploteR
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20 months ago
rthapa ▴ 50

Hi,

I am using karyoploteR to visualize CNV. I am getting following error. But I do have the genomic region in a bed file. Could anyone provide a suggestion what might have gone wrong?

Error in plotKaryotype(zoom = "Chr01:3647-12170735", main = "BedGraphs", : You are trying to set the zoom to a region not part of the current genome. In addition: Warning message: In .Seqinfo.mergexy(x, y) : The 2 combined objects have no sequence levels in common. (Use suppressWarnings() to suppress this warning.)

cnv • 412 views
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