We applied WES to determine the pathogenic variants.
Meanwhile, we want to check the LOH status of the sample.
We used CNVKit to calculate the CNV of the sample.
I am wondering is there a tool to get the LOH segment of the samples?
Plink or roh hunter :) https://github.com/imgag/ngs-bits/blob/master/doc/tools/RohHunter.md
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