Which bioinformatic tool can I use to assess overlapping genes between 2 datasets
0
0
Entering edit mode
4.6 years ago
tpm ▴ 30

Which bioinformatic tool can I use to assess overlapping genes between 2 datasets

bioimformatictools toolbox proteins • 996 views
ADD COMMENT
0
Entering edit mode

Do you want to asses the identity or the number of overlapping genes? You should attempt be present your question with more specificity.

ADD REPLY
0
Entering edit mode

I am analysing proteomic data. Basically, I have data several gene IDs scored for wild type strains and for knockout strain. My question is, how can I assess effectively genes that are identical. Is there some Bioinformatic tool that I can use?

I am sorry for being unspecific rikki.frederiksen :), but it is true, my question was not clear :). I hope it is now :)

ADD REPLY
0
Entering edit mode

Are you working with a genome? Transcriptome? How were they processed? Is it an assembly? Usually assemblies reduce redundancy by removing identical contigs. Are you working with peptides or spectral counts? What tools are you currently using the examine the proteome?

ADD REPLY

Login before adding your answer.

Traffic: 1104 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6