Question: Machine learning - NGS data
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gravatar for stanedav
8 months ago by
stanedav50
stanedav50 wrote:

Hey guys, I am thinking about a new project. I am bioinformatician in a small lab, where we have mostly WES data. I would like to learn machine learning programming, I am OK with writing scripts in python, make data analyses with pandas etc. A few months ago I made the Machine Learning course by google (https://developers.google.com/machine-learning/crash-course/ml-intro), now I have a plan for my project:

1) We have plenty of annotated WES variant with classification made (each variant has pathogenicity evaluated by annotations)

2) I will gather these annotated WES data and I will use a machine learning approach to train the model for evaluation of annotated WES data - it will help decide pathogenicity of the variant or at least helps to show which annotations are more significant.

I am planning to use TensorFlow and python.

Do you think, that this approach is good way to go, or I am completely "off"?

machinelearning ai wes ngs • 254 views
ADD COMMENTlink written 8 months ago by stanedav50

Do you have an idea for what features to use?

ADD REPLYlink written 8 months ago by Asaf8.5k
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