Question: Plasmid Phylogeny from Whole genome sequencing
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gravatar for karthick.1087
4 months ago by
karthick.108720 wrote:

Is there any way to construct phylogenetic tree of plasmids from whole genome sequencing? Please suggest the tools or methods for the same

ADD COMMENTlink modified 4 months ago by gayachit200 • written 4 months ago by karthick.108720
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gravatar for gayachit
4 months ago by
gayachit200
India
gayachit200 wrote:

The best would be to sequence the plasmids and do a phylogeny but if you only have whole genome data, I think you would have to extract the plasmid sequences using tools like plasmid finder or plasmid seeker and do a phylogeny the same way as any other using tools like MEGA and MAFFT etc. For reference : https://www.frontiersin.org/articles/10.3389/fmicb.2018.02167/full#h3

ADD COMMENTlink written 4 months ago by gayachit200
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