clustal omega distance matrix option
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17 months ago
fyfes ▴ 60

Hi, do you know maybe how to select kind of BLOSUM (30 or 60) matrix in clustal omega command?

Now I have:

clustalo -i FASTA --distmat-out=DISTMAT --full

clustal distancematrix • 686 views
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Please use the formatting bar (especially the code option) to present your post better. You can use backticks for inline code (text becomes text), or select a chunk of text and use the highlighted button to format it as a code block. I've done it for you this time.

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thank you

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I've downloaded he source code to see how this can be done but couldn't find it. There is some options in some of the files for different BLOSUM matrices but I don't think you can change it in the main function. Anyway, I don't expect it to have a large impact