clustal omega distance matrix option

Question

[fyfes]

Hi, do you know maybe how to select kind of BLOSUM (30 or 60) matrix in clustal omega command?

Now I have:

clustalo -i FASTA --distmat-out=DISTMAT --full

[Ram]

Please use the formatting bar (especially the code option) to present your post better. You can use backticks for inline code (`text` becomes text), or select a chunk of text and use the highlighted button to format it as a code block. I've done it for you this time.

[fyfes]

thank you

[Asaf]

I've downloaded he source code to see how this can be done but couldn't find it. There is some options in some of the files for different BLOSUM matrices but I don't think you can change it in the main function. Anyway, I don't expect it to have a large impact