ModRefiner can not open a PDB file
0
0
Entering edit mode
14 months ago

Hi everyone

I modeled my protein on I TASSER and then tried to refine it on the modrefiner right on the desktop (the web version is unavailable). However, I get the following message: "PDB file can not be opened" (in this case, the protein I just modeled). Has anyone had a similar problem, and if so, any suggestions on how to resolve it? Both structures (the model and the template) are in PDB format. The command line I used was the same as indicated in the program's documentation.

./mcrefinement data_dir bin_dir ini_name ref_name ran_num

data_dir: data directory which contains ini_name. / bin_dir : directory which contains all the library files. / ini_name: model to be refined. / ref_name: reference model which is also in data_dir. Only Ca atoms are used as restraints. The model doesn't require full-length and continuous backbone. / str_val : strength value in [0,100]. Larger value makes the final model closer to the reference model. / ran_num : random number in [0,1000000].

Best regards!

modrefiner pdb standalone package • 353 views
ADD COMMENT

Login before adding your answer.

Traffic: 1761 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6