Entering edit mode
3.9 years ago
imrankhanbioinfo
▴
70
Hi there,
Is there any way to get rid of this while creating object for Deseq2. I used script:
dds <- DESeqDataSetFromMatrix(countData = cts,
colData = coldata,
design = ~ condition)
Error in DESeqDataSet(se, design = design, ignoreRank) :
counts matrix should be numeric, currently it has mode: character
I check my count matrix and I don't see any character specified only numeric values except row names as genes and colum names as samples. Then I also run the script to see if my count matric is numeric
all(is.numeric(cts))
False
I don't know where creating dds showing me this error. I will appreciate your help in this matter.
Imran