Question: DREME [MEME-suite] run locally results in empty output
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gravatar for ktm
4 months ago by
ktm0
ktm0 wrote:

I have installed the MEME suite locally (bioconda, MEME 5.1.1, python=2.7) because I want to search for motifs in a number of sets of sequences automatically instead of uploading each manually to the website. When I run them though the output does not contain any motifs. When I compare the same set of sequences through the online tool it does result in a list of motifs. I'm using the same command line code locally as is given at the end of the (successfull) online file. (dreme -verbosity 1 -oc . -dna -p cluster1_filtered.txt -t 18000 -e 0.05).

Does anyone have a suggestion what could be going on?

motifs rna-seq dna dreme • 164 views
ADD COMMENTlink modified 8 weeks ago by Biostar ♦♦ 20 • written 4 months ago by ktm0
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