Question: Retrieving site under selective pressure on MIME
gravatar for emiliomastriani
5 days ago by
Harbin, China
emiliomastriani30 wrote:

Hi guys, I am new using MEME and I have some troubles to understand the results. For example, I obtained the site 9628 results under selection. Now I wish to "see" who this site is .... Is it enough to get the nucleotide at position 9628 into my MSA? For further analysis on this site, should I consider only that nucleotide (9628) or the codon starting at this position? Furthermore, the mentioned site looks to be under selective pressure both into other datasets with different geo-localization: should I repeat the analysis using a different method (SLAC) to confirm that the results is significant?

PS.: Can someone suggest me a good forum specialized on viral bioinformatics?

Thank you very much

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