Question: Biopython vs Python
0
gravatar for mspingdeng
6 months ago by
mspingdeng0
mspingdeng0 wrote:

Hi, Please help -

If already have python 3 in laptop, is biopython still needed to download? I already downloaded python 3; when I checked on the www.bippython.org, there is also "download", are they the same or different?

  • sorry if it is a naive question. Thank you in advance for your kind input.
genome • 337 views
ADD COMMENTlink modified 5 months ago • written 6 months ago by mspingdeng0
1

If you need to work with the biopython package, you need that. Think it this way, if you have windows OS, do you need microsoft office ? Answer is yes, if you need powerpoint!

ADD REPLYlink written 6 months ago by lakhujanivijay5.3k

Please help:

after install biopython in pycham, the downloaded sequence file is not recognized by pycham. what can i do? Thank you.

the link below shows how it is after i tried to open the file after download.

ADD REPLYlink written 5 months ago by mspingdeng0

Sorry, but without the link, we cannot see what is supposedly wrong. If the installation causes problems for you, did you consider creating a conda environment managing biopython for you (Conda Biopython)?

ADD REPLYlink modified 5 months ago • written 5 months ago by ResearchR80

Thank you for trying to help.

https://ibb.co/nwpZzX3

The above is the link.

I generated a new file, make sure the project interpreter has biopython 1.77, pip3.8. Download the fasta file; however, when try to open it, it says it is not exist. Want to know where step is missing?

Thank you. Best!

ADD REPLYlink written 5 months ago by mspingdeng0

Try giving the full path to the file (i.e. where was it downloaded to?). This is not a biopython/python issue, it is just that your script is looking at the wrong path.

ADD REPLYlink written 5 months ago by cschu1812.5k
0
gravatar for lumal29
6 months ago by
lumal2980
Montreal
lumal2980 wrote:

Hi, Biopython is a bioinformatics package for python, so you will need to install it with pip install biopython in a command line.

ADD COMMENTlink written 6 months ago by lumal2980

Thank you so much, got it! appreciate very much!

ADD REPLYlink written 6 months ago by mspingdeng0
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