I am trying to run Orthologous clustering on a set of 20 genomes for comparative genomics. I found the program PorthoMCL, which is supposed to be an easier and faster alternative to OrthoMCL. I uploaded my 20 protein fasta files and the program ran very quickly. However, the output is very confusing and I have been unable to find any information on how to move forward with the output. Has anyone used this program before and can tell me more about the output and how to use it? Or can anyone explain the output I have? (The output of the program is two group files: one that ends in all.ort and one that ends in all.par).
Question: PorthoMCL for Ortholog Clustering
6 weeks ago by
brittanymlebert • 10
brittanymlebert • 10 wrote:
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