Question: (Closed) WGBS Data Analysis Related
0
gravatar for shrinka.genetics
5 weeks ago by
shrinka.genetics0 wrote:

Hello I am working on WGBS Data. I am using MethylSeekR package

library(MethylSeekR)

set.seed(123)

system.file("extdata", "Lister2009_imr90_hg18_chr22.tab",package="MethylSeekR")

I understand, my input file will go in the place of "Lister2009_imr90_hg18_chr22.tab". Now my question is,

1) What is set.seed(123) ?

2) If I put my seq data in place of "Lister2009_imr90_hg18_chr22.tab" , then what is extdata?

Regards Shrinka

sequencing next-gen • 76 views
ADD COMMENTlink written 5 weeks ago by shrinka.genetics0
1

Hello shrinka.genetics!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.

Cheers!

You've already asked a follow up question on your previous post. Please do not keep opening new posts instead of sticking to existing posts. If this behavior continues, your account might be suspended.

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by RamRS27k

I have posted many questions, which one you are talking about?

Thanks Shrinka

ADD REPLYlink written 5 weeks ago by shrinka.genetics0

I have posted many questions

My point exactly. Keep all related discussion in a single thread unless the matter at hand actually requires to be asked as a new question.

which one are you talking about

I included a link to the one I'm talking about.

ADD REPLYlink written 5 weeks ago by RamRS27k

@ shrinka.genetics @ RamRS

Same query was posed at the end of this post (C: WGBS Data Analysis Related) and is addressed.

ADD REPLYlink modified 7 days ago • written 7 days ago by cpad011213k
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