Question: Setting up environment for RNASeq on university HPCC CondaHTTPError: HTTP 000 CONNECTION FAILED
6 weeks ago by
mahejabeen.nidhi • 10
mahejabeen.nidhi • 10 wrote:
$ conda install -c bioconda fastqc Collecting package metadata (current_repodata.json): failed CondaHTTPError: HTTP 000 CONNECTION FAILED for url <https://conda.anaconda.org/bioconda/linux-64/current_repodata.json> Elapsed: - An HTTP error occurred when trying to retrieve this URL. HTTP errors are often intermittent, and a simple retry will get you on your way. ConnectionError(MaxRetryError("HTTPSConnectionPool(host='conda.anaconda.org', port=443): Max retries exceeded with url: /bioconda/linux-64/current_repodata.json (Caused by NewConnectionError('<urllib3.connection.VerifiedHTTPSConnection object="" at="" 0x7fe37c3ff050="">: Failed to establish a new connection: [Errno 101] Network is unreachable'))"))
I am using the university's HPC system (details of it below) for RNASeq. However, as you can see above, I cannot download packages due to CondaHTTPError. How can I resolve this?
$ conda info active environment : None user config file : /home/mhnidhi2/.condarc populated config files : /home/mhnidhi2/.condarc conda version : 4.7.12 conda-build version : 3.18.9 python version : 3.7.4.final.0 virtual packages : base environment : /opt/ohpc/pub/anaconda3 (read only) channel URLs : https://conda.anaconda.org/bioconda/linux-64 https://conda.anaconda.org/bioconda/noarch https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /opt/ohpc/pub/anaconda3/pkgs /home/mhnidhi2/.conda/pkgs envs directories : /home/mhnidhi2/.conda/envs /opt/ohpc/pub/anaconda3/envs platform : linux-64 user-agent : conda/4.7.12 requests/2.22.0 CPython/3.7.4 Linux/3.10.0-957.el7.x86_64 centos/7.6.1810 glibc/2.17 UID:GID : 1311:1001 netrc file : None offline mode : False
ADD COMMENT • link •