Calculate enrichment factor from a list of GO terms
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4.2 years ago
felipead66 ▴ 120

I have a list of genes and the corresponding GO terms for a non-model organism. Could I calculate enrichment factor from the list of GO terms?

R GO enrichment factor • 1.1k views
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Yes. You could try using clusterProfiler::enricher and pass in your GO-term to gene mappings with the TERM2GENE argument. This won't identify GO-term-depletions though. https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html

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