Question: miRNA analysis: ranking
gravatar for tushar131189
6 weeks ago by
tushar1311890 wrote:

Hi I have data for deferentially expressed miRNAs for two different cultivars of a crop under two different treatments. (2 cultivars X 2 treatments = 4 sets of data)

-Can I use log2Fold change values for Heat map construction using all the miRNAs detected commonly in all four sets?

-How to rank the expression data to find the best responsive miRNA? The best responsive miRNA should be determined on the basis of activities in all 4 sets, not in single set. There is R based tool named as "RobustRankAggreg" for such thing I guess. But is there any other simple alternative for that?


sequencing rna-seq • 107 views
ADD COMMENTlink modified 14 days ago • written 6 weeks ago by tushar1311890

Hello everyone....

Is there any method available for ranking the miRNAs/genes other than "R". Because "R" based statistics is far from user friendly for newcomer. Please any kind of help/suggestion is appreciated .

ADD REPLYlink written 14 days ago by tushar1311890
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