Question: Convert #Ss To #Rs Snp Ids
2
gravatar for explodecomputer
7.5 years ago by
explodecomputer20 wrote:

Hi

I have about 500k #ss SNPs (from an Affy 5.0 chip). I would like to find the #rs numbers for each of these SNPs. Would anyone happen to know how would I go about doing this? I also have allele names for each #ss number, but no physical or genetic positions.

Thanks very much!

snp • 3.0k views
ADD COMMENTlink written 7.5 years ago by explodecomputer20
4
gravatar for Pierre Lindenbaum
7.5 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum124k wrote:

A table linking the #ss to the #rs is available at ncbi at : ftp://ftp.ncbi.nih.gov/snp/organisms/human_9606/database/organism_data/SNPSubSNPLink.bcp.gz

CREATE TABLE [SNPSubSNPLink]
(
[subsnp_id] [int] NULL ,
[snp_id] [int] NULL ,
[substrand_reversed_flag] [tinyint] NULL ,
[create_time] [datetime] NULL ,
[last_updated_time] [datetime] NULL ,
[build_id] [int] NULL ,
[comment] [varchar](255) NULL
)
ADD COMMENTlink written 7.5 years ago by Pierre Lindenbaum124k

Sorry for my slow response to your very quick one. Many thanks for this info!

ADD REPLYlink written 7.5 years ago by explodecomputer20

sir.. is there any method available to convert #rs to#ss id??

ADD REPLYlink written 2.0 years ago by keerthuguna960
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