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• DNA-binding sites to proteins in bacteria
  is there a data base for all dna-binding sites to proteins for the bacteria domain?
• Identical structure in different domains.
  Dear fellows I have 8 sequences of proteins based on their functional similarity reported by exp...
• Binding Free Energy
  Hi to all, How much free energy needed for protein-protein or protein-drug interaction? How to id...
• How To Obtain All The Binding Sites/Pockets Of A Specific Protein By Providing The Pdb Id?
  Hi all. I would like to find all the binding site and ligand of specific protein. I already kno...
• Maestro (Schrodinger Software), Protein Data Bank,
  Hi all, I am new to Maestro and have not done structural biology in quite a bit. I am examining ...
• Correlation of expression changes
  Hi There is list of genes which expression are supposed to be controlled in similar way by two p...
• Retrieve RNA-protein binding sites from CLIP-Seq
  Hi all, We want to map the possbile RNA-protein binding (RBP) sites to our predicted transcripts...
• Looking For A Molecular Visualization Software To Study Binding Sites Of A Protein
  Hi all, I am new to bioinformatics. I am interested in studying binding sites of proteins at the ...
• Getting hints on protein function by correlating its ChIP-seq peaks with public datasets?
  Hi, First of all, my apology that the question might be a little confusing. I'll try to explain. ...
• Significance Of Binding Site And Active Site In Drug Metabolism
  What is the significance of binding and active site of protein in drug metabolism? I mean to ask...
• Protein sequences to where they bind to the genome
  I have a multifasta with multiple sequence proteins. My aim is to locate the sites in the genome ...
• QUESTION: Does anyone know of a software similar to PepComposer for computational peptide design?
  PepComposer (https://www.ncbi.nlm.nih.gov/pubmed/27131789) computationally generates peptides bin...
• chipseq identified sequences
  HI All, I am not familiar with chip-seq data analysis. I would like to know why the chip-seq ide...
• Annotating non-coding DNA (CRM): TF binding site analysis
  Hello, I am trying to annotate a ~300KB region from a insect genome which is a non-protein codin...
• Predicting DNA-binding sites of proteins from amino acid sequence
  Guys,i can t found programs for Predicting DNA-binding sites of proteins from amino acid sequence...
• DNA binding site motif database
  I have a list of unique kmers (5-mers in this case) that are essential to the pathway I'm researc...
• protein binding sites
  Hello, I have around 200 protein's fasta file. How can I find these proteins binding site with ...
• Are there known nonribosomal RNA-protein complexes binding site on mRNA of arabidopsis thaliana
  Are there any dataset or paper which giving any nonribosomal RNA-protein complexes binding site o...
• Searching For Proteins That Have Similar Type Of Residues In Binding Pocket
  I am working with some protein that has 6 polar basic residues on its binding site. I would like ...
• Prediction of RNA binding regions in protein
  Hello everyone, I have a set of proteins (amino acid sequence, structure not know and no homolog...
• Best Genome Viewer Program
  Hello all, I am new to bioinformatics and was wondering what genome viewer program users of site...