I have tried the PIVOT package for R, which can use CSV files (available at this GEO accession, with bar codes as columns and genes in the rows) to analyze scmRNA, but apparently the files are too large for it to handle.
So I tried following this scanpy tutorial and I immediately got stuck, because its input is a .mtx file.
I attempted to use Cerebro, which is made for non coders but it requires a .crb or .rds file as input. There are no files like that in the first dataset, and multiple files in the second (while Cerebro only loads one).
So, honestly, I don't even know what to ask. Any solution for whichever method is welcome