Igv Genome Viewer: Problems While Loading Dgv Track
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Entering edit mode
12.0 years ago
romsen ▴ 70

Hello,

I have problems loading the DGV track in the IGV Genome Browser. It doesn't work. By clicking
File - Loading from Server - Annotations (hg18) - Variation and Repeats - Genomic Structural Variation (DGV) the track should be loaded. But an error occur.

http://www.freeimagehosting.net/newuploads/ywnr1.jpg

Therefore I load the CNV track from the UCSC-DAS Server with the URL: http://genome.ucsc.edu/cgi-bin/das/hg18/features?type=dgv

But unfortunatly the information and color code is missing for gains and losses.

Perhaps you have an idea to solve this problem. It would be very nice to have this color code: Brown, blue and red for gain/loss, gain and loss of sequence.

Thank you!

igv cnv • 3.2k views
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Entering edit mode
12.0 years ago
Echo ▴ 40

Does this kind of file needed to be indexed before loading into the IGV?

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