Question: metagenomic bacterial identify
0
gravatar for SurdanBurasi
3 months ago by
SurdanBurasi0 wrote:

Hello. I have a metagenome study. What do I have to do to identify the bacterial species in this bacterial cluster. Sequencing data was generated using fastq format 16S rRNA genes.

identify bacteria metagenomic • 121 views
ADD COMMENTlink modified 3 months ago • written 3 months ago by SurdanBurasi0

What have done so far? What is fastS format?

ADD REPLYlink written 3 months ago by gayachit200

it can't be fastS that I wrote wrong. the right one is FASTQ.I am so sorry :(( I actively annotate new generation sequencing data. But I will work for the first time in the field of metagenomes.

ADD REPLYlink modified 3 months ago • written 3 months ago by SurdanBurasi0
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Have you gone through online materials that are available. There are so many bioinformatics analysis guides available. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2593568/, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3351745/, https://www.researchgate.net/post/can_someone_guide_me_in_processing_the_metagenomic_16s_rRNA_data_which_is_in_fastq_format

You should atleast make an effort first.

ADD REPLYlink written 3 months ago by gayachit200

check mothur and/or qiime tutorials.

ADD REPLYlink written 3 months ago by ugurcabuk130
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