Question: Bedtools genome coverage
0
gravatar for sl16878
10 weeks ago by
sl168780
sl168780 wrote:

Hi,

I am running a nanopore seq data based on a virus infected sample. I have created a bedfile and used the genome coverage in bedtools. I am a bit stuck at interpreting the coverage of my genome. Does this mean that I have zero coverage depth? my reference sample is a virus genome that i have split into each gene.

1   2   3   4   5
DQ874880.1  0   852 852 1
DQ874879.1  0   992 992 1
DQ874878.1  0   1432    1432    1
DQ874877.1  0   1532    1532    1
DQ874876.1  0   1733    1733    1
DQ874875.1  0   2196    2196    1
DQ874874.1  0   2303    2303    1
DQ874873.1  0   2295    2295    1
genome  0   13335   13335   1
ADD COMMENTlink modified 10 weeks ago by Pierre Lindenbaum129k • written 10 weeks ago by sl168780
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1380 users visited in the last hour