Bedtools genome coverage
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Entering edit mode
14 months ago
sl16878 • 0

Hi,

I am running a nanopore seq data based on a virus infected sample. I have created a bedfile and used the genome coverage in bedtools. I am a bit stuck at interpreting the coverage of my genome. Does this mean that I have zero coverage depth? my reference sample is a virus genome that i have split into each gene.

1   2   3   4   5
DQ874880.1  0   852 852 1
DQ874879.1  0   992 992 1
DQ874878.1  0   1432    1432    1
DQ874877.1  0   1532    1532    1
DQ874876.1  0   1733    1733    1
DQ874875.1  0   2196    2196    1
DQ874874.1  0   2303    2303    1
DQ874873.1  0   2295    2295    1
genome  0   13335   13335   1