Bedtools genome coverage
0
0
Entering edit mode
14 months ago
sl16878 • 0

Hi,

I am running a nanopore seq data based on a virus infected sample. I have created a bedfile and used the genome coverage in bedtools. I am a bit stuck at interpreting the coverage of my genome. Does this mean that I have zero coverage depth? my reference sample is a virus genome that i have split into each gene.

1   2   3   4   5
DQ874880.1  0   852 852 1
DQ874879.1  0   992 992 1
DQ874878.1  0   1432    1432    1
DQ874877.1  0   1532    1532    1
DQ874876.1  0   1733    1733    1
DQ874875.1  0   2196    2196    1
DQ874874.1  0   2303    2303    1
DQ874873.1  0   2295    2295    1
genome  0   13335   13335   1
nanopore bedtools genome coverage genome coverage • 279 views
ADD COMMENT

Login before adding your answer.

Traffic: 2223 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6