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• Conserved sequence for MSA
  Hi , I am working on SARs sequence, I made Multible Alignment for the sequences unsing Mafft and ...
• How To Extract Conserved Regions From A Large Number Of Sequences
  I have 1061 sequences , I want to extract the conserved regions, Most of the servers accept onl...
• Find conserved blocks and extract subalignment with Python
  Hi everyone, After aligning DNA sequences, I would like to extract a sub alignment as follow: -...
• Extracting Indels from two aligned DNA sequences
  How i can extract Indels out from two aligned DNA sequences using python or biopython?
• Does anyone know how to build a local conserved domain database from multiple sequence alignment for running RPS-Blast locally?
  Does anyone know how to build a local conserved domain database from multiple sequence alignment ...
• conservative position extraction
  I have kind of fastq files with multiple records: 1. >ID some information 2. --A-TGTGAC 3....
• PROVEAN input script
  Hi everyone, I would like to write a python script to extract amino acid substitutions and inde...
• Script For Parsing A Biological Sequence From A Public Database In Python
  Greetings to the Biostar community, I am currently following a bioinformatics module as part of ...
• How To Extract Scores From Wigfix Files
  Hi, I've downloaded "Conservation scores for alignments of 45 vertebrate genomes with Human" and...
• Extract Simple Alignment From Sam/Bam
  Hi I have annotated a number of RNA reads with the originating gene, and keep them in a bam file...
• How to extract hundreds of CNEs (conserved non-coding element) loss events from whole-genome multiple alignment files (MAF)
  Recent, I had read one paper :https://academic.oup.com/nar/article/40/22/11463/1147721. In this p...
• How to extract sequences from multz sequence alignment on UCSC genome browser?
  I want to do some realignment of a segment of the genome that show conservation between different...
• Align UniRef Cluster for conservation study
  I want to align all sequences from the UniRef cluster "UniRef50_A7ZUK2" to see the conservation o...
• Extract every CDS sequences from a VCF file
  Hi everyone, I have an alignment of genome sequencing reads mapped to a reference genome. I crea...
• fastQ files exploration
  How can I extract the sequences identifier only from a fastq file without the sequences or the qu...
• How To Predict Conserved Phosphorylation Sites From Multiple Alignment
  Is there a tool that looks for phosphorylation sites in multiple aligned sequences and scores the...
• Strain specific primers from multifasta file
  Hi, I have a collection on isolates we are going to inoculate in plants. To quantify them in plan...
• How to extract partial sequences from an DNA alignment in fasta format
  Dear community, I have a long DNA sequence alignment in fasta format (I prefer to open the align...
• Extracting pairwise alignment info
  Hello everyone, I am trying to write a bash script to extract information from a pairwise alignm...
• Conserved regions of an alignment
  Hello, Is there any tool that I can find conserved regions of an alignment and create a list wit...
• How to calcualte the phastCons score of a short RNA sequence?
  I have a set of 3'UTR mRNA sequence segment, I want to calculate the phastcons score of each nule...