Entering edit mode
3.9 years ago
aiswaryabioinfo
▴
30
How can I calculate aligned sequence length coverage from the results of protein domains obtained through pfam_scan.pl program. The result consist of columns such as
input seqs_id
alignment start and end
envelope start and end
hmm_accession
hmm_name
type
hmm start and end (I don't know)
hmm length
bit score
E-value
significance
I am trying to calculate the aligned sequence length coverage for each protein and filter the results. Could anyone please suggest me how can I calculate the same
