Question: How to download/save sample table presented at GEO2R
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gravatar for archisman
4 months ago by
archisman0
archisman0 wrote:

I'm looking for a solution to download or save the sample table similar to the GEO2R for a GEO dataset.

Here is an example: https://www.ncbi.nlm.nih.gov/geo/geo2r/?acc=GSE14468

I can use GEOquery package in R to do that.

gse <- getGEO("GSE14468", destdir = getwd())
phenoData <- (pData(gse[[1]]))

But with this, I have more than 70 columns with some same information and its a long list to choose from. Please suggest me a solution. Thank you.

geo2r R geo • 200 views
ADD COMMENTlink written 4 months ago by archisman0
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