Can I analyse single-ended WGS data with average readlength 35 bp by MetPhlAn?
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3.9 years ago
dpc ▴ 240

Hi friends!!!

I have a WGS file (PRJEB23292) with average read length 35 bp and the sequences are single-ended. Can I profile them with MetaPhlAn? (I could not find any information regarding these two parameters in their website.)
metaphlan wgs bowtie readlength metagenomics • 636 views
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MetaPhlAn tutorial does not indicate a requirement for paired-end data so you can try.

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