Question: extracting count matrix from GEO
0
gravatar for lordoftheflower
5 months ago by
lordoftheflower10 wrote:

Hi

I would like to extract count matrix data from "GSE98969" however when i did expr(), there is no data at all. May i know if i am missing out something?

data = getGEO("GSE98969") datExpr = exprs (data[[1]]) dim(datExpr) [1] 0 97

or does it mean only raw files were uploaded. thanks

geo • 203 views
ADD COMMENTlink modified 5 months ago by Kevin Blighe67k • written 5 months ago by lordoftheflower10
0
gravatar for Kevin Blighe
5 months ago by
Kevin Blighe67k
Republic of Ireland
Kevin Blighe67k wrote:

Indeed, there does not seem to be any normalised data for this study, neither in the FTP record. You could check other websites where the authors may have hosted it; otherwise, re-processing from raw data is necessary.

You could, of course, also ask the authors directly.

Kevin

ADD COMMENTlink written 5 months ago by Kevin Blighe67k
1

thanks Kevin; will process the raw data again

ADD REPLYlink written 5 months ago by lordoftheflower10
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