Question

KEGG mapping for larger sample size (100) ?

0

Entering edit mode

3.9 years ago

sunnykevin97 ▴ 980

Hi

I assembled 100 RNA_seq datasets into assembled transcripts I'd like to map these transcripts to KEGG to know the metabolic pathways how I do it for larger datasets ? suggestions please!

Thanks

RNA-Seq KEGG • 826 views

ADD COMMENT • link updated 3.9 years ago by young_bioinformatician ▴ 230 • written 3.9 years ago by sunnykevin97 ▴ 980

0

Entering edit mode

What does To know the metabolic pathways mean? Is this a model organism or a complete de novo assembly? What is the exact question you want to answer?

ADD REPLY • link 3.9 years ago by ATpoint 81k

0

Entering edit mode

I'm working with non-model organism want to map assembled transcripts to KEGG to know the annotation. I tried KEGG Automatic Annotation Server, it doesn't work out for me. I had 100 assembled transcripts from 100 different datasets. How I do KEGG annotation ?

ADD REPLY • link 3.9 years ago by sunnykevin97 ▴ 980