FASTA file split

Tutorial:FASTA file split

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3.8 years ago

Juke34 8.5k

how to split a fasta file?

This is a recurring question and many answers can be found among many threads in biostars.

Hoping it can help to choose the appropriate tool depending the task or the coding language wished.

fasta • 2.4k views

ADD COMMENT • link updated 13 months ago by Ram 43k • written 3.8 years ago by Juke34 8.5k

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Thanks for doing the review!! I needed to switch from Pyfasta, and the table with links to examples made it really easy to pick an alternative :-)

ADD REPLY • link 14 months ago by ando.kelli ▴ 60

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Have you tried SEDA? We are very interested in obtaining user's feedback as we are about to release a new CLI.

ADD REPLY • link 13 months ago by Hugo ▴ 380

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Nice tutorial. We have developed SEDA, a tool for processing FASTA files, and it has two functions for file splitting: Split (https://www.sing-group.org/seda/manual/operations.html#split), and Regular expression split (https://www.sing-group.org/seda/manual/operations.html#regular-expression-split). Would you consider adding it to the repository?

ADD REPLY • link 3.8 years ago by Hugo ▴ 380

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Yes sounds good . Is it GUI only?

ADD REPLY • link 3.8 years ago by Juke34 8.5k

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Yes, it is GUI only.

ADD REPLY • link 3.8 years ago by Hugo ▴ 380

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