Question: Is rsburead splice-aware? Should I use HISAT2, rsubread, or some other aligner?
24 days ago by
rezaeir75 • 10
rezaeir75 • 10 wrote:
- I'm currently learning different approaches for RNA-seq data QC, alignment, and analysis. However, I'm confused that which tool is best for alignment. Because I'm comfortable with R, I'd rather stay in R environment and use Rsubread but I want to be sure that I'm not sacrificing accuracy for ease.
- What do you think about Rsubread? How does it compare to other tools considering speed and accuracy? Is it splice-aware? How does it compare to HISAT2?
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