Reference file Annotation

Question

[shrinka.genetics]

I am using MethylKit package for WGBS Data analysis. With this package two annotation reference files are given refseq.hg18.bed and cpgi.hg18.bed. These are not complete file. From where I can get the whole file, so that I will be able to do the complete analysis with them.

Answer 1

[Kevin Blighe]

Hey,

You can get these in BED format for any genome version via the UCSC Table Browser. Please follow the advice here (for CpG islands): A: How to find CpG island for specific region

Kevin