I have a large list of genes that come from genomic regions identified using a population genetic test statistic on genome-wide sequence data (not expression data). I would like to see if this list of genes contains enrichment for any particular biological categories. However the list of genes is vary large - hundreds of genes, and it seems that DAVID and Panther are unable to handle such a large list. Does anyone know of gene list enrichment software that is not constrained to a limited number of genes (as far as people are aware).
Thanks in advance,