4C-seq data analysis website

Question

[xiaokai.li2019]

Is there a free 4C-seq data analysis website? Please recommend 4C-seq data analysis websites to me.

[ATpoint]

You asked this before Question: Visual interface operation 4C-seq analysis process

4C-seq is not a super common technique, but there are packages to analyze data for example at Bioconductor. Do you have some R background? I know it becomes increasingly popular to use ready-to-use solutions such as Galaxy, but I still encourage users to learn some programming and really look at the data first hand rather than applying black-boxed solutions.

[xiaokai.li2019]

Thank you. I don't have R background and I am currently studying hard. Now, I want to conduct data analysis as soon as possible. I know the Galaxy website and have tried to use it for data analysis. However, there is no 4C-seq analysis software package on the Galaxy website.

Answer 1

[Dan]

You might find the following publication supportive to have a relevant starting point for further analysis. https://www.nature.com/articles/nmeth.3922?foxtrotcallback=true