Long non Coding RNA databases for GSEA and ORA

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3.8 years ago

Van9 • 0

Hi! I am doing GSEA and ORA on RNA-seq data with mRNA and non-coding RNAs mixed. I need to look especially into the lncRNAs but it is being difficult to obtain results. Does someone know a database I could use for lncRNA? I am new at this and I am not entirely sure what should I use. Thanks!

RNA-Seq R rna-seq gene • 714 views

ADD COMMENT • link 3.8 years ago by Van9 • 0

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I need to look especially into the lncRNAs but it is being difficult to obtain results

Which part is difficult? Is there an error you are getting?

ADD REPLY • link 3.8 years ago by igor 13k

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It is difficult to get results because the databases I am using for the analyses do not contain information about lncRNAs I guess... I don't get any error, it is just that it does not find any result. (It works well because I do the same with mRNA and I get the corresponding results).

ADD REPLY • link 3.8 years ago by Van9 • 0

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So what you really are looking for are lncRNA pathways (or gene sets), right?

ADD REPLY • link 3.8 years ago by igor 13k

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