Hi friends, I am using R phyloseq software package for visualisation of data. I don't know why am I getting an incomplete stacked barplot at "genus" level like this (attachment) . I am getting a complete and a nice barplot at the class and Phylum level though. I am using the following code:
# setting the seed to one value in order to created reproducible results set.seed(1) # scaling the human data to the smallest samples. Note: rngseed is similar to set.seed human_scaled <- rarefy_even_depth(human_data, sample.size=52975, replace=FALSE, rngseed = 1) # Make a data frame with a column for the read counts of each sample plot_bar(human_scaled, fill="Genus")
I am new in R and metagenomic data analysis. And, don't know how can I get the full "genus" level barplot. Can anyone please help me out?
Thanks and Regards, DC7