Question: GO Enrichment DAVID/Panther
1
gravatar for Ksandersen
4 months ago by
Ksandersen10
Ksandersen10 wrote:

Hello All

I'm presently trying to perform GO-term enrichment analysis on some variable genes that I have identified. I want to perform a GO-term enrichment analysis in DAVID and in Panther, to explore the different out-puts from both programs.

Where I get confused is that Panther has two GO-Term levels one called GO-slim biological processes and another called GO biological process complete. Whereas, DAVID has GOTERM_BP_1-5, GOTERM_BP_Direct, GOTERM_BP_All and GOTERM_BP_FAT.

My question is rather any of the Panther terms corresponds to the DAVID terms. I'm thinking that the Panther GO biological process complete could corresponds to DAVID GOTERM_BP_All term, however, I dont know..

I hope my question makes sense.

Best Regards Kristian

rna-seq gene • 268 views
ADD COMMENTlink modified 5 weeks ago by Biostar ♦♦ 20 • written 4 months ago by Ksandersen10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1235 users visited in the last hour