How to calculate RNA-seq read coverage around STOP codons
0
0
Entering edit mode
3.8 years ago
supertech ▴ 180

I have illumina RNA-seq data from a ligation-based RNA-seq libraries. I need to calculate read coverage per nucleotide around STOP codon (+/- 300 nt or upstream or downstream), with single nucleotide resolution for all human transcriptome (combined mRNAs in single graph, not individually). I am looking for pointers how to do this. Thanks. .

rna-seq rna RNA-Seq • 563 views
ADD COMMENT

Login before adding your answer.

Traffic: 1851 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6