what is the cut-off for saying hat a gene set is positively/negatively represented in GSEA? I have 2 phenotypes and I have done GSEA. Based on FDR <0.25 no gene sets are significantly represented in the GSEA output. Why is that? Is FDR<0.25 the correct cut-off for GSEA? I have a large gene data and some of them were significantly differentially expressed. but why my GSEA have weird results?
Question: what is the cut-off for saying hat a gene set is positively/negatively represented in GSEA?
15 days ago by
rhasanvandj • 0
rhasanvandj • 0 wrote:
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