Similar posts • Search »

• Weighted Pathways Analysis
  I'm trying to do a pathways analysis/check for gene set enrichment on a list of genes. Right now ...
• Enrichr analysis using ranked gene list
  Hello, I am trying to perform enrichment analysis and it seems that enrichr is a better option t...
• Rank-based GO enrichment packages for R?
  As stated in the title: I am looking for a rank-based (or possibly score-based, but I am not sure...
• GSEA APPLICATIONS DAVID, REACTOME
  Hello again... do applications like Ingenuity Pathway Analysis (IPA), DAVID, AMIGO, Reactome, K...
• Gene Set Enrichment Test Tool That Can Compare Multiple Gene Lists
  I received some excellent recommendations of enrichment test tools for testing single gene sets h...
• David enrichment analysis inconsistency
  I have a list of N genes. I used DAVID (http://david.abcc.ncifcrf.gov) in order to get the GO ter...
• Can One Apply A Summary Statistic On Rank Data Of Microarray Gene Expression
  Hi guys, I have a list of 6 probes representing the same Gene_Symbol as in a microarray gene expr...
• input gene size in enrichment analysis
  Hi there. I´m new with bioinformatic and I used DAVID for enrichment analysis. I have two gene ...
• Testing for enrichment between two weighted ranked lists
  Is there any tool/package/test to perform GSEA-like analysis between two weighted ranked lists of...
• Low Coverage in Pathway Enrichment Analysis using DAVID
  From a list of 3000 significantly differentially expressed genes (from a universe of 20000 genes ...
• GSEA Preranking algorithms
  I have done a RNA-seq analysis using Galaxy and my next step would be GSEA. Because it's a RNA-se...
• UCSC_TFBS enrichment with DAVID
  Hello, I submitted a gene list to DAVID and have clicked on UCSC_TFBS before doing clustering. Th...
• Gene set enrichment analysis vs functional enrichment analysis?
  I'm confused about what these two are. I saw functional enrichment analysis being used to descri...
• Alternative tools to DAVID pathway clustering analysis for lists of bateria genes
  Hi, In the past I have used DAVID pathway clustering tool to get  enriched clusters of genes for...
• Select Species In David Api
  I'm trying to using David API in order to perfom an enrichment analysis on a gene set. I tried to...
• Identify Transcription factor from a list of genes
  Hello Everyone, I wish to identify the transcription factors from a list of genes using function...
• Regarding p-value for calculating enrichment in MapMan software
  Hello, Is there anyone using the MapMan pathway /ontology analysis software ? I am having troubl...