Question: Filtering repetitive element during mapping
0
gravatar for dahun73
2 days ago by
dahun7310
dahun7310 wrote:

Hello,

I have a question for mapping. I want to align mm10 genome without any repetitive element but it is hard to get a repetitive element sequence. RepBase is not free to use for individual user. Is there any good suggestion for mapping without repetitive element?

rna-seq mapping alignment • 36 views
ADD COMMENTlink modified 2 days ago by JC10k • written 2 days ago by dahun7310
1
gravatar for JC
2 days ago by
JC10k
Mexico
JC10k wrote:

The UCSC Genome Browser provides the genome with repeats masked in this file http://hgdownload.soe.ucsc.edu/goldenPath/mm10/bigZips/chromFaMasked.tar.gz

ADD COMMENTlink written 2 days ago by JC10k
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