Question: Filtering repetitive element during mapping
0
gravatar for dahun73
4 months ago by
dahun7310
dahun7310 wrote:

Hello,

I have a question for mapping. I want to align mm10 genome without any repetitive element but it is hard to get a repetitive element sequence. RepBase is not free to use for individual user. Is there any good suggestion for mapping without repetitive element?

rna-seq mapping alignment • 138 views
ADD COMMENTlink modified 4 months ago by JC12k • written 4 months ago by dahun7310
2
gravatar for JC
4 months ago by
JC12k
Mexico
JC12k wrote:

The UCSC Genome Browser provides the genome with repeats masked in this file http://hgdownload.soe.ucsc.edu/goldenPath/mm10/bigZips/chromFaMasked.tar.gz

ADD COMMENTlink written 4 months ago by JC12k

I'm sorry for late reply. Thanks! I will check it now!

ADD REPLYlink written 4 months ago by dahun7310
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