Question: Imputation output from TOPMED server
6 days ago by
melania 2282 • 90
melania 2282 • 90 wrote:
As beginner and it's my first imputation, I have few questions about TOPMED imputation server please any one used to this type of imputation server could help : )
- The output of the imputation does it contain typed and untyped SNPs ?
- If yes how to know the typed ones ?
- When a filter based on r2 is used, does it deleted the typed SNP from the VCF as they don't have an r2 value ?
Thank you very much !
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