I was using this wonderful package for annotation of my BED files using R. The package is annotatr. In this package, the annotate_regions() function has an option to specify the minimum overlap you would like to consider to assign that annotation to the BED coordinates. However, they haven't mentioned any range as if it is from 0 to 1.
Also, what does 1L represent in minoverlap = 1L. What should be the value to allow 50% of overlap?
Anyone having experience with Granges could help