Hello, I have been using Seurat for melanoma analysis. There are two tables I am using:
- An expression matrix where each row is a gene and each column is a cell
- A "cell_cluster_assignment" file where the cluster/cell type is given (for example: cell Cy72.... has cluster B, meaning it is a B cell)
Using the expression matrix, I can create a UMAP colored by principal components, but is there any way to color the UMAP using the "cell_cluster_assignment"?