How To Use Rsem With Soapdenovo-Trans
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Entering edit mode
10.4 years ago
Rm 8.2k

I am new to use Rsem; does any one attempted using RSEM for SOAPdenovo-Trans contigs/scaffolds for differential expression of transcripts from genome without reference?.
How to integrate them?

I am trying trinity ...but it is taking for ever....

trinity rna-seq • 2.7k views
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Entering edit mode
6.6 years ago
kanika.151 ▴ 130

How about Salmon and Kallisto?

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