I want to filter a vcf file by eliminating all the SNPs which have INFO <= 0.4.
In the shell, I therefore enter the following command : bcftools filter -e 'INFO<=0.4' myfile.vcf.gz The command runs for a veeeeeeery long time and, at the end, the file remains exactly the same. I have the feeling that it just reads all my file but nothing is filtered.
How could I modify my command to get a real filtering ? Thanks for any help.