How to combining VEP and VCF in one file
1
0
Entering edit mode
9 months ago
MAPK ★ 1.7k

I was provided a VCF file and a snp-annotated VEP output file separately. I know VEP tool can annotate VCF by adding consequence field of VEP to INFO field of VCF as discussed here. But is there a way to use VEP output tsv file to annotate VCF INFO column?

vcf vep • 275 views
ADD COMMENT
2
Entering edit mode
9 months ago

try bcftools annotate.

ADD COMMENT

Login before adding your answer.

Traffic: 1980 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6